rs48165587 SNP Detail

Summary

• ID
  rs48165587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT GCAGGCAGGG CCTGAGTGGC
  Y
  AGCATACTCA CAAGCCCTTA GATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803576	NES16473401	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T		T	T		T
ss145546406	ENSMUSSNP513907	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss319993404	CHEV_1_137687010	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48165587					SNP	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803576	NES16473401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718171 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1646 bp upstream
Rr419278	regulatory region 419278	1283 bp distal
Rr419279	regulatory region 419279	1465 bp distal
Rr419280	regulatory region 419280	132 bp distal
Rr419281	regulatory region 419281	407 bp distal
Rr419282	regulatory region 419282	1804 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron