rs48165680 SNP Detail

Summary

• ID
  rs48165680
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79627940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCCGGCGA CTCGGCCGGG GAACTTTCTG GAAAGCTCCC
  GCAGTGGGGA GCTCCAGAGT CAGGGAGGGA GCGCCGCGGG GGAACGGAAG GAGAAGCGGC
  S
  GGAGGAGAGC CCGGCTCGGT GGGAAAGAAA GCGCGCAGGG GTCGGGCGGG CCACCGCTCA
  CCAGCACGCG CTTGAAGAGG GCGCTCTCCT TGGCGGGCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139812889	ENSMUSSNP3161882	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48165680					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79627940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	within coordinates
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	146 bp upstream
Rr496090	regulatory region 496090	within coordinates
Rr496091	regulatory region 496091	203 bp proximal
Rr496092	regulatory region 496092	268 bp proximal
Rr496093	regulatory region 496093	291 bp proximal
Tssr129900	transcription start site region 129900	1079 bp upstream
Tssr129901	transcription start site region 129901	139 bp downstream
Tssr129902	transcription start site region 129902	166 bp downstream