rs48166416 SNP Detail

Summary

• ID
  rs48166416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:6184412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGGTAG TTTAAATATG
  TAATTGAATA ACAACAGCAA GCAATAGTAA GTAAGCTGAG TCAGCTCACT CCTCCCCACT
  ACACCAGGGA GAAGCATAGC AGACAGTCCA AGAACAGGTC CATGTTCTGA AGAAACTGAG
  GTCACAGGAT TCTTGTTTTG TTTTCTTGGA GTGTTCTCAC AAGCACTGGG ACTTCTTCTC
  Y
  CACAGGTTCA TTCCTGGACT GTCTTCCGAC CCACCTGTTT CTCCATCCTC ATCCTTGCTT
  TTGTGGCTAA CTTGTTTATG TCTCTGATCT GTACCTTTCT GGAAGCTTGG ATTCAAGCGC
  TCTTAGATAC TTGACAGACC AGATGGAACG CACTTCACAA ACTGTTTGAG CCCCCAGCCC
  ATTCTTGTTT CTTCTGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60525290	NES16542701	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48166416					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525290	NES16542701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6184412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15590	predicted gene 15590			1732 bp upstream
Gm66616	predicted gene, 66616			1524 bp downstream
Rr521311	regulatory region 521311			1525 bp distal
Tulp4	TUB like protein 4			Intron
				Noncoding-Transcript-Variant