rs48166855 SNP Detail

Summary

• ID
  rs48166855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127653523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGAGGG TGGAGGAAAC
  ACAGAAACAG TAGAGGAGGA AGATAGTTAT AACTACCAGC TTTGTCATGT AACCAATTGC
  AAAAAACAAG GATTATAATT GACGTGAGTC CTTTAGTTAT ATTTTGTTAA GATATGTTTG
  GGCAGATATT TGCTTTATTT TCTTGATTTA TCATGCAGTA TCACATCAAT GAGAGAATAC
  Y
  AATGATTGTT ATATGTATGG TTGAGATTCT GAAAGATTTT TTCCTTAAGG AACAGTACCA
  TTTATTCTAA AAAATGCATC ACGTGTTTGC TATAGTACAC GAGGTAGTTA TATCAATTTA
  GGCATAATTA TGGCTTGGTA ATTGTTTTCA TTTGGAAACT AAGCATGGCT TAAGGAGATG
  CCATTATGTA TCAAGTAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873335	ENSMUSSNP2541672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957578	CHEV_3_127562792	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48166855					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127653523 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Rr584887	regulatory region 584887	1524 bp proximal
Tssr31614	transcription start site region 31614	1711 bp upstream