rs48167043 SNP Detail

Summary

• ID
  rs48167043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78181746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA GTCTATCCCA GGATTGCTTA
  R
  CTGGCCATAC ACCATTCTTT GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144741402	ENSMUSSNP3940723	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss319802319	CHEV_1_78201684	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48167043					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78181746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	903 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	1250 bp proximal
Rr370614	regulatory region 370614	1161 bp downstream