rs48167450 SNP Detail

Summary

• ID
  rs48167450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:29408209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGCATT AGGAAAGAAT
  TATGATTGCT ATGATAAAAA TGATGTTTAA ATGCTACTAA CATGCAACAC AAAATTCAAA
  GGTTGCCTTT ACAAAACTTC AAAGGCTGAG CTGGAAATGA GATCAAAGAA AGAGTTTAGG
  CTTTGTAAAT TAATGTCCAG TGTCCAAAGC TAGAGCTTGC TGCTAAAAAT CTTGCTGAAT
  R
  ATGACTTTCT GGAGTGAGTA AATGCTTTCT TTACGTTTTT ATCTTGAAGA AATTTATTTT
  GTCATCTCTA GGTACTGTAT ATCAATCAAA ATCAGTACAA TCATGTGTTT ATGCACCATA
  ACTACAGAGA CATTTTAAAA AGTATAAGAC TTCTGTTTTA AAGCATTGCA TATTTTATAG
  AGAAAATCGT AGACTGTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52217129	NES15216638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48167450					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52217129	NES15216638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:29408209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1415	CpG island 1415	1316 bp proximal
Rr429491	regulatory region 429491	627 bp proximal
Rr429492	regulatory region 429492	747 bp proximal
Rr429493	regulatory region 429493	921 bp proximal
Rspo3	R-spondin 3	Intron