rs48167854 SNP Detail

Summary

• ID
  rs48167854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGGTGCAT GGCTGGGTGG TGGTGgcggc
  agtggcagca gcagcggcag cagcagtggc agTggcagcg gtggtacact cctctaatcc
  cagcactcaa gaggcagagg caagcagaga tctctgtgag ttcaaggcca acttgtctat
  R
  gagcaagttc caggacagcc agggctgttg ttacacagag aaatcctgtc ttgaaagcta
  aattaaaATA ATAATAATAA TGTGGTGCTG AATGGTTATG GGTTTCAGAA GTTTCCAAAG
  GAATCTCTAC CTTCTCTCTG AGAAGTTATG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145546297	ENSMUSSNP2618546	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319993371	CHEV_1_137684984	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48167854					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716145 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	114 bp distal
Rr419277	regulatory region 419277	407 bp distal
Rr419278	regulatory region 419278	221 bp proximal
Rr419279	regulatory region 419279	540 bp proximal
Rr419280	regulatory region 419280	1327 bp proximal
Rr419281	regulatory region 419281	1598 bp proximal
Tnni1	troponin I, skeletal, slow 1	within coordinates