rs48169396 SNP Detail

Summary

• ID
  rs48169396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:19957636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGATAT CATCTGTGGG
  GTATTAAAAA TGAAAACTTG GGTTCTAGCA AGAAATAGTT GATGATTATT ATCTGCAGTT
  TCAAACTTAT TTTCTTTTAA TTATTGTCTA TGCCAATTAA AACTCACATG CCTTTCTCCT
  ACCCCAATTC TCTGCCTGCC TGTGACTCCT ACAGACAAAT CAAGCAGTGG AAGGTTCTAC
  M
  CTATCCCTTT TACACCCCAT TCACAAGGCC ACAGATTTGT CTGCATCCCT GGACAATCAG
  GTGATATCAC CATTCCCTTG CTCACTTTGT CCCCAGCAAG TCTAGTAGAA GTCTTGAGGA
  TTGCCCTGTC CCCTTGGTGC TTAAATCTAA TTTTATTAAG ATGATAGAGG CCATTTGAAG
  AGAAAATGAA TAAAATTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60868782	NES15987364	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48169396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60868782	NES15987364	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:19957636 () rs orientation: forward

Symbol	Name	Function Class
Rr379021	regulatory region 379021	628 bp upstream