rs48170468 SNP Detail

Summary

• ID
  rs48170468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81015938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCACTT ATGATGTACA
  TTTCCAAGAT GGTGCCAACC TCTGACAAAG GCCGCTTCTA TGCCTTTGGT AGAGTGTTCT
  CTGGGGTGGT GTCCACGGGC CTGAAGGTCC GGATCATGGG CCCCAACTAC ACGCCTGGGA
  AGAAAGAGGA CCTATACCTG AAGCCTATCC AGAGGTGGGC ACTGGCCTTA TTTTCCTGAG
  Y
  CCTGGCTGCT TCCCAGGAGC ACCCTGTTGA CAGTTGCCCT CCCTCTAGAA CCATTCTGAT
  GATGGGCCGC TACGTGGAGC CGATTGAGGA CGTGCCATGT GGAAACATTG TGGGGCTGGT
  CGGAGTGGAC CAGTTCCTTG TGAAGACGGG GACCATCACT ACCTTTGAGC ACGCTCACAA
  CATGCGCGTG ATGAAGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388466	NES15267102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48170468					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388466	NES15267102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81015938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	1928 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435545	regulatory region 435545	408 bp distal
Rr435546	regulatory region 435546	63 bp proximal
Snord37	small nucleolar RNA, C/D box 37	1091 bp downstream
Tssr94699	transcription start site region 94699	899 bp downstream
Tssr94700	transcription start site region 94700	755 bp downstream
Tssr94701	transcription start site region 94701	686 bp downstream
Tssr94702	transcription start site region 94702	521 bp downstream
Tssr94703	transcription start site region 94703	456 bp downstream
Tssr94704	transcription start site region 94704	430 bp downstream
Tssr94705	transcription start site region 94705	365 bp downstream
Tssr94706	transcription start site region 94706	197 bp downstream
Tssr94707	transcription start site region 94707	142 bp downstream
Tssr94708	transcription start site region 94708	86 bp downstream
Tssr94709	transcription start site region 94709	138 bp upstream
Tssr98570	transcription start site region 98570	691 bp upstream
Tssr98571	transcription start site region 98571	325 bp upstream