rs48171672 SNP Detail

Summary

• ID
  rs48171672
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94072734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTATTAT AATCTTTATC
  TCACCCTTCA GGAAGAACAA CCCACTACAA ATTAAAGTTA ATGCAATGAA AAGGTGGCCA
  CCAACGGATG ACGCAAATGC CACTAAACGC AAAGATCTAC GGAGAGATGA GCCTGCGGCT
  AATCACGGCT CCAGCTGTCT CTGTCATCTT TAAGGAGCTT GCCCCACCCC TTGTGGCACC
  K
  GTCTTCAGTG GTTCAGCAGC CTATTGTCAT TACCAGCCAT GATTCAAGTT CCTCGGGTTC
  AGAAAGCAAG CCATAGCCAG GCAACCTCCG CCCCCCCCAG CCTCCTCCTG GCCACCCCTG
  CCTTTTGGTG GGGCCAATTC AAAAGAATTG CCCCAAACAG AGCTGCTAGA ATCCAGTCAC
  CAGGAGCAGG ACCTCCCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132635254	ENSMUSSNP2146519	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss323812251	CHEV_11_94043222	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48171672					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94072734 () rs orientation: forward

Symbol	Name	Function Class
Tssr110134	transcription start site region 110134	1566 bp upstream