rs48171690 SNP Detail

Summary

• ID
  rs48171690
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4215555 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        CACATCCAGG CCATTCGTCT CTCTCCCGAC GCTTAAACAC
  CACATTGGCT TAGGTCTGCT TAGTCGCCAT CGGCATTATC AAAACACGAA GATTTCTCTC
  K
  TACTAGCAAA GAAAGGGCCT GTCTGTTTTC TTCCTCCACT TGATTAAATA CTCATTGTAT
  TAACATGGCA GCCAATAAGT CTTAAATTGA AATTTTGTTA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss52129279	NES15245661	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs48171690					SNP	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52129279	NES15245661	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4215555 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	825 bp upstream
Cpgi1267	CpG island 1267	747 bp proximal
Cpgi1268	CpG island 1268	22 bp proximal
Gm67397	predicted gene, 67397	within coordinates
Gm67407	predicted gene, 67407	within coordinates
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	335 bp proximal
Rr426945	regulatory region 426945	1241 bp proximal
Tssr3113	transcription start site region 3113	562 bp upstream
Tssr3114	transcription start site region 3114	975 bp upstream
Tssr92240	transcription start site region 92240	768 bp upstream
Tssr92241	transcription start site region 92241	798 bp upstream