rs48173075 SNP Detail

Summary

• ID
  rs48173075
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC AAAATCTTTC AAGTCTTTCC
  T
  TCTATATTCG TTGTTAAGGG GACTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148807885	ENSMUSSNP2951736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324291289	CHEV_13_23832966	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48173075					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1035 bp distal
Gm60901	predicted gene, 60901	1204 bp upstream
H1f2	H1.2 linker histone, cluster member	1566 bp downstream
Rr369656	regulatory region 369656	559 bp downstream
Rr388130	regulatory region 388130	559 bp upstream
Rr475931	regulatory region 475931	1911 bp distal
Rr475932	regulatory region 475932	714 bp proximal
Rr475933	regulatory region 475933	1215 bp proximal
Tssr118855	transcription start site region 118855	1899 bp downstream
Tssr118856	transcription start site region 118856	1162 bp downstream
Tssr118857	transcription start site region 118857	922 bp downstream
Tssr118858	transcription start site region 118858	1204 bp upstream