rs48173097 SNP Detail

Summary

• ID
  rs48173097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89337675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAC TCTGCTCTCT CCCAACTCTG
  R
  GTAACACTAT GGTTCTTGCT CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133372176	ENSMUSSNP6566016	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321852055	CHEV_6_89310687	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48173097					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89337675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	564 bp proximal
Plxna1	plexin A1	within coordinates
Rr146639	regulatory region 146639	within coordinates
Tssr62008	transcription start site region 62008	1860 bp downstream
Tssr62009	transcription start site region 62009	1888 bp downstream