rs48173986 SNP Detail

Summary

• ID
  rs48173986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72020240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATT GGTTTTCTGC TTTCACTTAC
  R
  TCCTGGGCAT TGAACTCAGG TCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145150790	ENSMUSSNP258495	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss322704853	CHEV_8_74091495	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48173986					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72020240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	1763 bp proximal
Nxnl1	nucleoredoxin-like 1	995 bp upstream
Rr665115	regulatory region 665115	796 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	1286 bp upstream
Tssr77870	transcription start site region 77870	1270 bp upstream
Tssr77871	transcription start site region 77871	1361 bp upstream
Tssr81733	transcription start site region 81733	984 bp upstream
Tssr81734	transcription start site region 81734	970 bp upstream
Tssr81735	transcription start site region 81735	964 bp upstream
Tssr81736	transcription start site region 81736	956 bp upstream
Tssr81737	transcription start site region 81737	944 bp upstream
Tssr81738	transcription start site region 81738	1867 bp downstream