rs48174327 SNP Detail

Summary

• ID
  rs48174327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6621911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGATAGA TAGATAGATA
  GATAGGTAGG TAGATAGACA ACAGAGGTGC TAAGAAAATT GACTTTGAAA ATAGGAATAA
  TTGCATATTA CTTTAAGAGT GGCCGCTATG TTGACAACTG TTAGATCTCA ACTAACACGG
  ATGACAGCAT GTACCTCCTT GTCCCTTTGG GAGAGCCCCG TGTTTAGGGA GAGCACGTCC
  Y
  GGCTGACCAA CAACAGAAAG GGCTGTAAGG GGTTAAAACA TTGGTGGTGG TTATGTCTAG
  ATCTGATCAG GGCGTGCCCA GCTTTACTTG CTCAGTTTTC TGGATAACTC GTCATTTGGC
  AACAACATTC ATTTATTCCG CAATAATTTT GCACTTGTCC AACACCTAAT CTTTAAAAGA
  GCTTTTTTAA AGCATTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62614972	NES17310616	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48174327					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62614972	NES17310616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6621911 () rs orientation: forward

Symbol	Name	Function Class
Fyb1	FYN binding protein 1	within coordinates
Rr498833	regulatory region 498833	162 bp proximal
Tssr130533	transcription start site region 130533	417 bp upstream
Tssr130534	transcription start site region 130534	449 bp upstream
Tssr133626	transcription start site region 133626	258 bp downstream