rs48175748 SNP Detail

Summary

• ID
  rs48175748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGAGAC AGAGTTCTGT
  TTATCTTTGG GTATCTATCT TCTTAGGAAA CAAATAACAA CAGCCAGAGT CCTGGAGAGA
  TGGCTCAGCA GTCAAGAGTA CTTGTTCTTG CAGAAGATCC AAGTTCCATT CCCAGAATCT
  ACTCGGTGAC GTATAACACT CATAACTCCA GTTCTAGGGG AGACAATGCC CTCTTTTGAC
  Y
  TCCTCATGCA CCAAATACAC AGGTATGCAC AGACATATAT GGGAACAAAA GGTTCATGCA
  CATAAATAAA TCTAAAAAAA ATTAAGGTTC AGCAAACTAG CTAGCTTTTT GTTTCTGTTT
  CTGTTTGTTT GTTTTTCTGT TAGACAGGGT TTCTTTGTAT AACAGAGCCC TGGCTGTCCT
  GGACTTGCTT TGTAGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145647280	ENSMUSSNP5244775	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48175748					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366184 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1229 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579	1106 bp proximal
Rr653308	regulatory region 653308	816 bp proximal
Rr653309	regulatory region 653309	1444 bp proximal
Rr653310	regulatory region 653310	1945 bp proximal
Tssr68503	transcription start site region 68503	1086 bp upstream
Tssr68504	transcription start site region 68504	1129 bp upstream
Tssr68505	transcription start site region 68505	1161 bp upstream
Tssr68506	transcription start site region 68506	1192 bp upstream
Tssr68507	transcription start site region 68507	1638 bp upstream
Tssr68508	transcription start site region 68508	1853 bp upstream