rs48176062 SNP Detail

Summary

• ID
  rs48176062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTCCAA GGATTTAGAG
  CCATGATGAA CAGATAGCCA ATAGTGCCCA TGGCCCTTAG ACTAGGGCCA TTTTCCTCAT
  GGGGTGGATT CAGACATGAC AGGTAAGGAG GGGGATAGCA GATGTAACTC TTCAACCCGG
  TAGAAAAGAA CCAAGGCTGC AAACATGACA TACAGCAATA CTTCTGGAGC CGCAGCGCCT
  R
  AGAAACTCTT ATAAACTGTC TTGGAGAACT GGTTTATGCT TTGAAGACAA TTCAAGTAGC
  CCTCTGGATA GTTAACTTTC TCGGGAGTGG ATATTTTTTC TTGTTGAAAC CAAAGACTCC
  CATTATTACC TGCACATTTG GTCTGTTTCT TTTAGTTGCC CCTTCAAATG CCAGGTAAGA
  CAAAGACGCT GGCTCACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251731	ENSMUSSNP4608463	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48176062					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	612 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	939 bp upstream
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	953 bp upstream
Tssr37061	transcription start site region 37061	965 bp upstream
Tssr37062	transcription start site region 37062	998 bp upstream
Tssr41531	transcription start site region 41531	850 bp downstream
Tssr41532	transcription start site region 41532	956 bp downstream
Tssr41533	transcription start site region 41533	1042 bp downstream
Tssr41534	transcription start site region 41534	1160 bp downstream