rs48177257 SNP Detail

Summary

• ID
  rs48177257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70874555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCTGTT CATCCTGACT
  TTAGCATACC TGGTCCAGCT CCCCTGTCAT TGTTTTCCCT GAGAACAGAG TCTCAGACAG
  ACAGTGGCTG CTCCATTCAC TCCTCTACAA GCTCACAGTT CTGTCCAGTC TTCAGAAGGC
  TGTCTTTCTC TTGACACCAT TGCTCCTTGT AGAGAAGCCA ACACCTGTCT GATCCTATCC
  R
  TGTGGAGCCC AGCTGTGTTT GCTTATGTCA ATGTGTAACT GCATATTATC TCCTTGAGGG
  ACTGGGGCCA TATCTTGGTC ATATATGGAG ATAATAACAG GTTCCCAGAA GTTTGCTCTG
  ATGGCGGGGC CTTGGAGAAC TGCCATAGAG GGTCGGTGAA TCAATATGGC TGATTTGAAG
  AAATAAGGCT TTGGAATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652717	NES15474561	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A		G
ss324416298	CHEV_13_70865314	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48177257					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652717	NES15474561	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70874555 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1366 bp downstream
Gm36607	predicted gene, 36607	within coordinates