rs48177563 SNP Detail

Summary

• ID
  rs48177563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52210750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGAGAG AGAGAGAGAA
  AGAGAGAGAA AGAGAGAAAG AGAGAAAGAA AGAAAGAAAG AAAGAAAGAG AAGAGAGAGA
  GAAAGAAAGG AAGAAAGGAA CAAAGAAAGA AGGAAAGAAA GAAAAGAAGG AAAAGAAAAC
  CTTGCTTTGA CCCAAGAATC AAGTGACTTT CACAAAATAG TTTGGAGATT GGGACAGAAA
  Y
  GAGATGACCT GGGACATGTT CAGGTCTCTT CCAGAGGGAC AGAACTAGCT TGAGCTCATC
  TTTTGAAAAC CAAATAGGCA TTCCTATTTT CAAGTAATTG TGAAGATGCC TGGAGTAAGA
  CTCTAGTTCT AGAAAATTCG TTATAGTTAC ACTAAACTGT GGCTCATGAA CCATGAGCAG
  GTTTCACAGG AGCCTTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60261844	NES15764083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48177563					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261844	NES15764083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52210750 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	within coordinates
Rr335419	regulatory region 335419	1851 bp proximal
Rr370289	regulatory region 370289	357 bp upstream
Rr405357	regulatory region 405357	73 bp upstream
Tssr145177	transcription start site region 145177	483 bp upstream
Tssr148690	transcription start site region 148690	198 bp downstream
Tssr148691	transcription start site region 148691	228 bp downstream