rs48178663 SNP Detail

Summary

• ID
  rs48178663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142202736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG TTCTTACTGG CCCCTGCTCC
  Y
  GCTCTTCAGT TTTTCTTAAG GTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136014813	ENSMUSSNP1487071	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		T
ss321002354	CHEV_3_142159939	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48178663					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142202736 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	within coordinates
Rr398084	regulatory region 398084	174 bp downstream
Rr586446	regulatory region 586446	65 bp distal
Rr586447	regulatory region 586447	within coordinates
Tssr32047	transcription start site region 32047	186 bp downstream
Tssr32048	transcription start site region 32048	171 bp downstream
Tssr32049	transcription start site region 32049	145 bp downstream
Tssr32050	transcription start site region 32050	83 bp downstream
Tssr32051	transcription start site region 32051	36 bp downstream