rs48179213 SNP Detail

Summary

• ID
  rs48179213
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40082157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT AGTGTGTGTG GGGGGAGGAA
  T
  CATAGAGAAA ATAAAAAGAA TGACA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144620686	ENSMUSSNP2350218	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48179213					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40082157 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	129 bp downstream
Tssr81027	transcription start site region 81027	232 bp downstream
Tssr81028	transcription start site region 81028	282 bp downstream
Tssr81029	transcription start site region 81029	401 bp downstream
Tssr81030	transcription start site region 81030	523 bp downstream
Tssr81031	transcription start site region 81031	1217 bp downstream