rs48179718 SNP Detail

Summary

• ID
  rs48179718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156055990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATATCCTCC ATCACTGTCT GCTTTTCCCT TTGAGGCACA
  GTCTCTCCCT GAACCTGGGG CTTACATTTT CTTGGCTAGG CTGGTAGACA TCAATTTTTA
  R
  CCATCCTCAT GTCCCAGCAT CCCCCAGAGC TGAGGTAATA GAGATGCATG GGATACCCAG
  CTTGTTGGAT GGGTGCTGGG ATCTGATCTG CCCAGGGAAC G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145791084	ENSMUSSNP4529858	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48179718					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156055990 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	1127 bp upstream
Rr421145	regulatory region 421145	1184 bp distal
Rr421146	regulatory region 421146	913 bp proximal
Rr421147	regulatory region 421147	1051 bp proximal
Rr421148	regulatory region 421148	1199 bp proximal
Rr421149	regulatory region 421149	1319 bp proximal