rs48179869 SNP Detail

Summary

• ID
  rs48179869
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:16428503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACAGAG AGAGAGAGAG
  ACAGATGGAG ACAAGAGACT TAAGAGACTG ACCAAGTTAG AGACACAGAT AGTCAGAGAC
  ACAGGGAGAT CGAGACTACT GACAGACTAG GACAGCTAGA AGTATGAGAG GGGTGTATCA
  AAACAGGCAG TGACTGGCAA GAGAAAGGAG CAGAGATCCT CCTGGGGCCC TGGAAAGAAA
  S
  GAAGGGTTCT AGACCCGAGT AGAGAACAGC AAAATAGAAA CATCTCTGAG CAAAAAGGAG
  ATATTGAGGG TCTGGGGAAC AAAATAATAA TTACAGATCC TGAGGACAAA TGACAGAGTG
  AAAGTACCTT ATAGAATGAC AGGCAAATAG AAATGCCAGA CATATCGTCA AACAAACAAA
  CAAACAAATA ACCCACTAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52154395	NES15233825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48179869					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52154395	NES15233825	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:16428503 () rs orientation: forward

Symbol	Name	Function Class
Rr230024	regulatory region 230024	585 bp proximal