rs48180189 SNP Detail

Summary

• ID
  rs48180189
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3767933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTGTTC TGGCGCTTGA
  CAGCTTCCAG TGCCTGGAAC AGCTCACTGC GGATGTTCTC ACGGTCTCTG CTTGCTTTAG
  CCAAGTCCTG GGTCACTACA AGGTCAGAAG AGTGGACATT TATAGTTGAG GTTAAGACCG
  GGACTTATGT ATAGGTCAAA ATATATATCC ATGGTCAGTT CATGGTGTCA CGGTCAAGAA
  K
  AACATCAATT TGAACGTGGC GGTTTCAGTT ACTCCAGAAA GCTGAGGTAG AGGAGGATTG
  TAAGGTCAAA GCTAACTTGG ACTACACAGA GAGTTTAAGA CCATCCTTGG TAACTTAATG
  GAGCCTGTCT CAAAACATAA AATGAGTGCT GGTAATAAGG TTGGTATTAG AGTACCTGCC
  TAGAATCCCC CAGCAAGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076261	NES16052887	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	T	T	T	T	T	T	T	G	T
ss148548789	ENSMUSSNP6205393	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48180189					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076261	NES16052887	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3767933 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Cpgi20034	CpG island 20034	692 bp proximal
Gm16553	predicted gene 16553	within coordinates
Rr400747	regulatory region 400747	636 bp upstream
Rr658970	regulatory region 658970	666 bp proximal
Rr658971	regulatory region 658971	787 bp proximal
Tssr80223	transcription start site region 80223	375 bp upstream
Tssr80224	transcription start site region 80224	351 bp upstream