rs48180504 SNP Detail

Summary

• ID
  rs48180504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74862241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA TAAGAAATAT CTTGAAAAGA
  R
  TAAAAGGGTG TCACTACTAC CCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136638922	ENSMUSSNP5912702	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss323007483	CHEV_9_74802766	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48180504					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74862241 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	within coordinates
Cpgi22037	CpG island 22037	1376 bp distal
Rr401516	regulatory region 401516	1929 bp downstream
Rr683036	regulatory region 683036	1862 bp distal
Rr683037	regulatory region 683037	913 bp distal
Tssr86115	transcription start site region 86115	1868 bp downstream
Tssr86116	transcription start site region 86116	1750 bp downstream
Tssr86117	transcription start site region 86117	1384 bp downstream