rs48180533 SNP Detail

Summary

• ID
  rs48180533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67063518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCCTCCA CAGTAGGAAG TTGCATGTTA ATTTGCTGGT
  TTTTAGCCAG ATTAAAGGAC TATCTAAAGA TTATATATGG TTTAATGACC CTAAAGGAAC
  R
  TAACTATGTT TAGAACCACC CTCCCAACCT TGTCTTTTTT TTTTTCTTTT AAATGCAAAC
  AGTTTCTCCA AAGGACTTGG AATCATCATT AGGTCATCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322989831	CHEV_9_67004043	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48180533					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67063518 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	576 bp distal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	569 bp distal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	744 bp distal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	149 bp downstream
Gm68695	predicted gene, 68695	973 bp upstream
Rr681889	regulatory region 681889	377 bp proximal
Rr681890	regulatory region 681890	818 bp proximal
Tssr90326	transcription start site region 90326	1005 bp upstream
Tssr90327	transcription start site region 90327	972 bp upstream