rs48181133 SNP Detail

Summary

• ID
  rs48181133
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61212943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA TTTTATGACA GTTTGTGTCT
  C
  TGTGTGTGTG TGTGTGTGTG TGTGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146621701	ENSMUSSNP2260433	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48181133					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61212943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			406 bp proximal
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			mRNA-UTR
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			within coordinates
Rr406076	regulatory region 406076			1427 bp upstream
Rr550838	regulatory region 550838			313 bp distal
Rr550839	regulatory region 550839			364 bp distal
Tssr157374	transcription start site region 157374			65 bp downstream
Tssr157375	transcription start site region 157375			22 bp downstream
Tssr157376	transcription start site region 157376			8 bp upstream
Tssr157377	transcription start site region 157377			47 bp upstream
Tssr157378	transcription start site region 157378			168 bp upstream
Tssr157379	transcription start site region 157379			201 bp upstream
Tssr160090	transcription start site region 160090			82 bp downstream
Tssr160091	transcription start site region 160091			104 bp downstream
Tssr160092	transcription start site region 160092			231 bp downstream
Tssr160093	transcription start site region 160093			333 bp downstream
Tssr160094	transcription start site region 160094			396 bp downstream
Tssr160095	transcription start site region 160095			482 bp downstream
Tssr160096	transcription start site region 160096			903 bp downstream
Tssr160097	transcription start site region 160097			1094 bp downstream
Tssr160098	transcription start site region 160098			1571 bp downstream
Tssr160099	transcription start site region 160099			1779 bp downstream
Tssr160100	transcription start site region 160100			1832 bp downstream