rs48181423 SNP Detail

Summary

• ID
  rs48181423
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164380098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GCCCAGCAAG GAAGGCCCAG
  M
  AAGGAAGGTG TACACATTCT ACCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60336992	NES15838320	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		A	C	C	C	A
ss145981073	ENSMUSSNP1933475	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48181423					SNP	C	C	C	C	C	C	C	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336992	NES15838320	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164380098 () rs orientation: forward

Symbol	Name	Function Class
Gm70527	predicted gene, 70527	1537 bp downstream
Rr372378	regulatory region 372378	within coordinates
Rr422240	regulatory region 422240	1245 bp distal
Rr422241	regulatory region 422241	46 bp proximal