rs48181513 SNP Detail

Summary

• ID
  rs48181513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101008463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGTGT CATGATGCAG
  AGAAAGGCTA GCTAGCACCT ATGACATTTG CTATATTTAA ATCAGAATGG CTGTCCTTTA
  GCCTGGGAAA ATCAGAACAA ACTTTCAAAG GTTATGGAAC TTCTGTGATA TCTAAGCTTG
  GCATGCAATC CTAAGCTCAT TAAAATGTGG TGTGTGTCTG GAGATGTCAT CCGCTACGCC
  R
  CTGTGACAGG TGTTAAGATG AGTGAATAAG CCAAAAGCAA CGTAAGGTCA TCCCTTGGCT
  GCATCAGTCT GGGATAATCC ATGGCTGCGT GCTGTGTACC TCTGTCCCAC TTCTGACGCT
  GCTTAGGAAA CCTGCACTTT CGGGGGTGTG GCCCTGTTGG TCCATCCTCT GTTTGGAGTC
  ATTGGGGAAA TGGTGTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61202770	NES16711396	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48181513					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202770	NES16711396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101008463 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	1419 bp upstream
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr378349	regulatory region 378349	1835 bp upstream
Rr615578	regulatory region 615578	within coordinates
Rr615579	regulatory region 615579	1051 bp proximal
Rr615580	regulatory region 615580	1430 bp proximal
Tssr47495	transcription start site region 47495	1420 bp upstream