TAAAATGTGT CATGATGCAG AGAAAGGCTA GCTAGCACCT ATGACATTTG CTATATTTAA ATCAGAATGG CTGTCCTTTA GCCTGGGAAA ATCAGAACAA ACTTTCAAAG GTTATGGAAC TTCTGTGATA TCTAAGCTTG GCATGCAATC CTAAGCTCAT TAAAATGTGG TGTGTGTCTG GAGATGTCAT CCGCTACGCC R CTGTGACAGG TGTTAAGATG AGTGAATAAG CCAAAAGCAA CGTAAGGTCA TCCCTTGGCT GCATCAGTCT GGGATAATCC ATGGCTGCGT GCTGTGTACC TCTGTCCCAC TTCTGACGCT GCTTAGGAAA CCTGCACTTT CGGGGGTGTG GCCCTGTTGG TCCATCCTCT GTTTGGAGTC ATTGGGGAAA TGGTGTCACA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61202770 | NES16711396 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
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rs48181513 | SNP | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61202770 | NES16711396 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr5:101008463 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm73351 | predicted gene, 73351 | 1419 bp upstream | ||||||
Gpat3 | glycerol-3-phosphate acyltransferase 3 | within coordinates | ||||||
Rr378349 | regulatory region 378349 | 1835 bp upstream | ||||||
Rr615578 | regulatory region 615578 | within coordinates | ||||||
Rr615579 | regulatory region 615579 | 1051 bp proximal | ||||||
Rr615580 | regulatory region 615580 | 1430 bp proximal | ||||||
Tssr47495 | transcription start site region 47495 | 1420 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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