rs48182283 SNP Detail

Summary

• ID
  rs48182283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCTATCC GTTTCCCCTT CATCCTCAGT
  ATTCCTCCTT TAATCCCATT TAGATTTTGG ATTACTGGGC TGTCCCTGTC ACACCCTGGG
  AGTCTAAGCT CATGTGCCCT CATGTGCTTT CCTCTGAACC TGCAATAGGT GGTAGGAAAA
  Y
  CTCAAATCCT TTTGGGATTT GAGCTAGTTC CACAATTAGC ATGAATACAT GATtttattt
  atttatttat ctatttattt attGGCTTAG ACCTGCCCTC AGTTGCTAAC TCTTCTCTTA
  GATTTTCACC TTCACCTCAG GTCAACACTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	MSM/Ms	SM/J
ss148982889	ENSMUSSNP1531091	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss319698414	CHEV_1_40571567	CHEVERUD	SCREENING_POP	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	LG/J	MSM/Ms	SM/J
rs48182283					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553882 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	666 bp upstream
Rr410075	regulatory region 410075	192 bp proximal
Rr410076	regulatory region 410076	651 bp proximal
Tssr65	transcription start site region 65	773 bp upstream
Tssr6477	transcription start site region 6477	655 bp upstream
Tssr6478	transcription start site region 6478	720 bp upstream
Tssr6479	transcription start site region 6479	749 bp upstream
Tssr11438	transcription start site region 11438	493 bp downstream
Tssr11439	transcription start site region 11439	1725 bp downstream
Tssr11440	transcription start site region 11440	1735 bp downstream
Tssr11441	transcription start site region 11441	1753 bp downstream
Tssr11442	transcription start site region 11442	1769 bp downstream
Tssr11443	transcription start site region 11443	1800 bp downstream