rs48182843 SNP Detail

Summary

• ID
  rs48182843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18089516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA GATGCTGTTC TGATCCCTCA
  R
  TTCCCTGACA CAGAAATGCT TTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60545767	NES16558076	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A	G	G	A	A		A	A	A	G		G
ss145227414	ENSMUSSNP1204236	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss325312318	CHEV_17_18006218	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48182843					SNP	G	G	G	A	G	A	A	G	G	A	A	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545767	NES16558076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18089516 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340652	regulatory region 340652	1917 bp distal
Rr340653	regulatory region 340653	1885 bp proximal
Tssr5021	transcription start site region 5021	1887 bp upstream
Tssr5022	transcription start site region 5022	1911 bp upstream
Tssr142817	transcription start site region 142817	1904 bp downstream