rs48184501 SNP Detail

Summary

• ID
  rs48184501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATATA GTAATAATAA
  TTACAGTTCT TCATGTTGTG GTGACCCCAA CAATAAAACC ATGTTCCATA ACTGATTTTG
  CTAGTTATGA ATGTTGTGTA ATGTCAATAT CTGTATTTTC TGATGGTCTT AGGTGACCCA
  CAGGCTGAGA ACCACTGGGT TAAAAGCATT TGTTGCTCTC ACAGATTTCA GGTCCCAGAC
  Y
  TTTGGGTGGC TTATAGTCTT CTGTAACTCC AGTTCCACGG GCATATGATA TCCAATTCTG
  GCCTCCATGG GCACCTGCAC TCATACACAT AGATTAAAAA GAAAAAAAGA AAAAACAAAA
  AAGCCCTCCA AATGTCATTG TCTCCTCCAG CTTTACCTGA TCACACAGAT TGGTTGTGTC
  AGTTGTGCTT CTAAAGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135869015	ENSMUSSNP4831066	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48184501					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk1	alpha-kinase 1			Intron
				Noncoding-Transcript-Variant
Tssr35586	transcription start site region 35586			572 bp upstream
Tssr35587	transcription start site region 35587			1624 bp downstream