rs48185741 SNP Detail

Summary

• ID
  rs48185741
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126222141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCACCA GCTCACCAAG
  CACCCCATCC TGGAAGCCAG CCTGGTATTT CATGACTGAA TTTGAGCCCT CGGTTGCTTA
  AAACAAATCC TCTGCATGTT TTAAATCATG GATGCTGGGG TTTTTTTTTT TTTTTTCATT
  TTGCAAATGG TATTAACAGA AACATTCTCT TCCAAAAGCA GCTCTATATA ATAGGACCTC
  G
  TGGTGCTCAA GAATATGTAG GGGACTGGCC ACAGGTTGTC TCTGGGACAG CACTGCAAAG
  AAACAAAGCA ACTTCCCTGG AAGAAACCAT AGAAACAGGC TCCTCAAAGC ATCTGCATAC
  ATTAGAACAA GGCAACAATC ACGGAGAACC GTTCAAGCCC ATATGCTACG CAATAAGGAC
  GCTCCCTTTC CAGATCAGCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145875155	ENSMUSSNP4166169	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs48185741					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126222141 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	277 bp downstream
Rr655536	regulatory region 655536	1259 bp distal
Rr655537	regulatory region 655537	708 bp distal
Rr655538	regulatory region 655538	561 bp distal
Tssr69045	transcription start site region 69045	64 bp downstream
Tssr69046	transcription start site region 69046	276 bp upstream
Tssr69047	transcription start site region 69047	478 bp upstream