rs48186461 SNP Detail

Summary

• ID
  rs48186461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55064662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGAATC TGACACCTTC
  AGACAGACGT TACATGCAGG CAAAAATATT AATGCACATA AAATAAACTT TGCATTTATC
  CAACTGGGAG TATGCTACAT TGAAGATATC AATAAGCCAA CAATCAAAGC TACAAAATAT
  CCATAAATCT CCATAAATCA ATAACCTATT AGGGTATGGG ACTCTACCTA TGCAGCTATA
  R
  GGAAGCCAGT AAGGAGTAAA CCATGCTTTC CTTCAGTAAG CACTTCCCCT CCCCCATGCT
  CTGGAAGTCC AATAATTTCA CTGGTTCCCC ACAATGGAAA ACAATTAAAA TAAATAACCT
  ACCACTGACT GAACAAAACA GCGACACGAT TCAATTTCCT AATTATTTTA CAAACAATAT
  CTGAAGTAGT CTAAAGATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ
ss60735001	NES16375829	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ
rs48186461					SNP	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735001	NES16375829	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55064662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	1317 bp proximal
Gm71172	predicted gene, 71172	1551 bp upstream
Rr371303	regulatory region 371303	700 bp upstream
Rr411122	regulatory region 411122	320 bp proximal
Rr411123	regulatory region 411123	1061 bp proximal
Rr411124	regulatory region 411124	1562 bp proximal
Rr411125	regulatory region 411125	1968 bp proximal
Sf3b1	splicing factor 3b, subunit 1	within coordinates
Tssr6707	transcription start site region 6707	846 bp upstream
Tssr11707	transcription start site region 11707	1683 bp upstream
Tssr11708	transcription start site region 11708	1874 bp downstream
Tssr11709	transcription start site region 11709	1970 bp downstream