rs48186849 SNP Detail

Summary

• ID
  rs48186849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114293172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCCCCA GGGGCAGTGT
  TTACCCTAGT GGTTAAAGTT GGCTACGTGC TACCCTTTTG GCAGCCAGGG AGCCCTTGGC
  CACCCACTCT CTATTCTGAT ACTATCACCT CTTTTTCTAT TGTGTCCAGT ATGGCCCATC
  CCAAGAAAAT GCTGCACCAT GCGTTCTCCT CTAGACAGGT GCTCAAGGGC AGAGGACAGG
  R
  ACAATCTTGT AATGTCGCTC ACCTAGAGGC CACCTGCACC CATTGGTGGG AACATTTTGA
  ACAGATTCCA GAGAAGCCGG CTTAGGCAAG GAGAACGGTT GCATGAGTGT GAAGTAGGTT
  TAAGTACGGA CGTGTAGCAA GCCAGGAGGA GGTGGCTTTC TGTGCTGGCA AACCCCAGAT
  TATGGAGAGA GAGCCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60825950	NES16029821	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48186849					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825950	NES16029821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114293172 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Tssr48071	transcription start site region 48071	315 bp upstream
Tssr48072	transcription start site region 48072	342 bp upstream
Tssr48073	transcription start site region 48073	360 bp upstream