rs48187004 SNP Detail

Summary

• ID
  rs48187004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15305029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTTCTC CAGGAGCAGC
  AAAGTCAGTA GTAAATGTAT ATTATAAGAT TTATTAAAAA AGAATTTGTT TATATAACTT
  CATGATCGGC CCTTTGGCCA GCAGTGCTCA AATAGTGAGA GGGCTCCATA TAAGGAGTCT
  TCTGTCCTGT GAAAGTAAAC ATGCCTGAAC TCCAGTTCAC TCTGCTACAC ATTTTCCTCT
  R
  TATCACTTAA AGCTGGAGAT TGAACCCATT TGGTGTTGTG CCCAGACTCC AGCTTCTATG
  TAGCTGGCTA GCCTCCAGGG ATAATTTGAT GTTCTGCAGT GTGACAATAA TAATTTAGCT
  TCTGTAGTAA AATGGAAAGT AAAAATTAGA GTGGGAGGGA GATGTGTGGT GATATTCCTG
  TTGCATCGCA GGAAAATAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148700018	ENSMUSSNP5646718	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48187004					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15305029 () rs orientation: forward

Symbol	Name	Function Class
Gm61108	predicted gene, 61108	894 bp downstream
Rr638	regulatory region 638	within coordinates
Rr766	regulatory region 766	within coordinates
Rr2063	regulatory region 2063	552 bp distal
Rr475207	regulatory region 475207	within coordinates