rs48187111 SNP Detail

Summary

• ID
  rs48187111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78183143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTTTCA TTAGGGGACC
  CAGGAAGACA GGAGCCAGAT CCAGAAGTTT TCAGGAGCAG AGTGTGAGAA GGGGAAGAGA
  GGCTGAGAGG GGGAAGTCAG AATCTTCATA GGCTCAAAGT TACACACACA CACACACACA
  CACACACACA CACACACACA CACACACGAA AAACATTCCT AACTGGAATG GGCTCACACT
  S
  GACAGTGCAG AATGACTGAC TCTTTGACTC TTTGTGTCTG GAAGAACTCA TGAGTATCTG
  GAGATAGGAA CTGATTCCTG GAACCACTCC TGCACACTCA AGGGATGCAC AGCTGGGGAT
  AGCAAGAACC CTAAAATGAA AGCACCATCT AGAAAGAAAA CATGACAACC ACATTACTGT
  GTCCTTAAAT CTTTCACTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144741444	ENSMUSSNP2971718	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48187111					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78183143 () rs orientation: forward

Symbol	Name	Function Class
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	within coordinates
Rr413697	regulatory region 413697	1647 bp proximal