rs48187438 SNP Detail

Summary

• ID
  rs48187438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91398862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATGCTA TGCAGATAGC
  ATTCATGTAG AAATTATCTT CTCTTCTCTG CTAATTATAA CTGTGAGGTA ATATTAAGGT
  GCATATTCCA TTTAATCATG CCTATTTAGG AGAAGTGCCT ATAATGAGTT CATGTTCCCA
  GCAATGAAAA GATCAAGAGA AAAGCCCATC CCCTCCCCCC AAGGTGATAA AGCATATAAC
  R
  GTGCTTCATA GTGGAGAGGC AAGCCTAAAT CATGCAGTAA AAGAATATAA AACAGTATTG
  ATGTTAGCTC TATGCTAAAA ATCACAAAGA CAAATAATAT AGAGTCCTTG CCCTCCAAGA
  GCTGAGAGTC TATCAGAGTG ATGGACATGT GAACAGACCA TTGGAATGCA GTGTGAACAA
  CACTGTAATA GAAATACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52679872	NES15527294	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48187438					SNP	G	G	G	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679872	NES15527294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91398862 () rs orientation: forward

Symbol	Name	Function Class
Gm41014	predicted gene, 41014	within coordinates
Gm47381	predicted gene, 47381	within coordinates