rs48188301 SNP Detail

Summary

• ID
  rs48188301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70935949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CAATACAGCT GACGAGACCA
  Y
  GGACCTTACT CAGGTCTCAC CAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146739077	ENSMUSSNP2729410	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320335465	CHEV_2_70943662	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48188301					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70935949 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	1960 bp downstream
Rr558671	regulatory region 558671	1985 bp distal
Rr558672	regulatory region 558672	1128 bp distal
Rr558673	regulatory region 558673	601 bp distal