rs48188463 SNP Detail

Summary

• ID
  rs48188463
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26839808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAACACC ACATATACCA
  TACACACACA CACCACGTAC ACATACACAT GCCACGCACA CACATGCGTG TACACATGCA
  CACACAGCCT GGCCTGCTGC TTTGGCCTTT CAGTAGCCCC GAGAGGTGTT AATTCTTGCT
  CGTCTCCTTT TTCCCTACTG TTCCTTCACT GGTTCCCTCG GTGAGGTGTG TATGACTTAC
  W
  GCAGGTGCAC AAGCCCAGAA CTCAGTGATC AGTGAGTCTC CCCTTCACAG TATCATCTCA
  GCTGAGCCAG GATGCACGAG CCATGACTTC TGCTTTCTAG AAGGTTCTTT TGCAGCTCCT
  CCTCCTGCCA TTCTTTAGAC TTCTATTGTC CTGGGTTAAT TTGCTTCTTA TAAACTCCAC
  CCAGGACTTC TCCATTTACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554453	NES16568382	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48188463					SNP	A	A	A	A	A	A	T	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554453	NES16568382	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26839808 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523901	regulatory region 523901	1847 bp distal
Rr523902	regulatory region 523902	368 bp distal
Rr523903	regulatory region 523903	125 bp proximal
Rr523904	regulatory region 523904	626 bp proximal
Tssr143257	transcription start site region 143257	678 bp upstream