rs48188880 SNP Detail

Summary

• ID
  rs48188880
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGTGAAT GGCTGTGTGG
  AATGTTCAGG AAAGCTCTTT AAAACAAGCT AACTCAAGTT GGGTGGTGGT GGCTCAAGCC
  TTTAGTCCGA GGAGGCAGAA GCAGAGGCAG GTAAATCTTT GGTTCAAGGC CAGCCTGGTC
  TACAGAGTGA GTTCCAGGAC AGCCAGGGCT ACACAGAGGA ACCCTGTCTC AAAAAACAAA
  C
  AAATGCTGGG CAGTGGTGGC ACACGCCTTT AATCCCAGCA CTTGGGAGGC AGAGGCAGGT
  GGATTTCTGA GTTCGAGCCC AGCCTGGTCT ACAGAATTCC AGGACATCCA GGGCTACACA
  GAGAAATCCT GTCTCGAAAA ACTCAAAACA AAACAAATAA CAACAAAACC AATAAAAATT
  GTAAGCCTCA GCGTAACAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149092839	ENSMUSSNP107867	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48188880					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573213 () rs orientation: forward

Symbol	Name	Function Class
Dctn6	dynactin 6	within coordinates
Rr661952	regulatory region 661952	844 bp proximal
Rr661953	regulatory region 661953	1276 bp proximal
Rr661954	regulatory region 661954	1783 bp proximal
Rr661955	regulatory region 661955	1792 bp proximal
Tssr80889	transcription start site region 80889	1703 bp downstream
Tssr80890	transcription start site region 80890	1757 bp downstream