rs48189033 SNP Detail

Summary

• ID
  rs48189033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGGTC TTCTTGTGGT
  GTCCTTGACT GCTCCCGCAC ACTCAATCCT ATCCCGCACT CTTCCACAGA ACTCCCAAAG
  CTCTGCCTGA TGTTTGGCTG TGGGTCTCTG CGTTTGTCTC AATGCACTGC TGGATGAAAC
  CTCTCAGGAG ACAGTTATGC TAGGCTCCTG TCTGCAAGCA CAGCAGAGGA TCATTAATAG
  Y
  GTCAGGGTTG GCTCTCTCCC ATGGGATGGG TCTCATCTTG GACCAGTCAT TGGTTGGCTG
  TTCCCTCGGT CTCTGCTCCA TCTTTATCCC TGCACATCTT GTAGGCAGAC AGATTTTGGG
  TGGAAGGTTT TGTGGGTGGA TTGATGTCCT TCTTCTTCCA CTGGATGTCC TGTCTGGCTA
  TAGGAGGTGG CTACTTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136423352	ENSMUSSNP3019108	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48189033					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039667 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1643 bp distal
Rr678057	regulatory region 678057	685 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1132 bp downstream