rs48189601 SNP Detail

Summary

• ID
  rs48189601
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57763347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCGGGTG GGATCGGCTG GAGCGGGAGG GGAGTGGCAA
  GACGGTCGGG TGGTGCTATG GAGATGGTGT AGTGCCCGAG GGGCGGGGTC TGAGGAGCGG
  G
  CGGAGGTGAT GGGTGGGGCC GGGTGGAACT ACTGGGATGA ACCACGGGGG GCAGGCCAGG
  TAAGGCGGGT GTCTACTGGT CCTAGAGCTC AGGGAGGGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss139591699	ENSMUSSNP407266	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48189601					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57763347 () rs orientation: forward

Symbol	Name	Function Class
AU020094	expressed sequence AU020094	1055 bp distal
Cpgi6542	CpG island 6542	within coordinates
Il17d	interleukin 17D	within coordinates
Rr404129	regulatory region 404129	100 bp downstream
Rr492824	regulatory region 492824	1398 bp distal
Rr492825	regulatory region 492825	1103 bp distal
Tssr125870	transcription start site region 125870	1086 bp downstream
Tssr125871	transcription start site region 125871	785 bp downstream
Tssr128966	transcription start site region 128966	423 bp upstream
Tssr128967	transcription start site region 128967	365 bp upstream
Tssr128968	transcription start site region 128968	245 bp upstream