rs48190202 SNP Detail

Summary

• ID
  rs48190202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGTCT GGAATCTGGA
  GGCAAGAACA GATGCAGAGG CCATGGAGGG GGTGCTGCTT ACCGCCTTGC TCTCCTTGGC
  TTGCTTAGCC TGCTTTCTAC AGAACAGAAG ACCACCAACC AGGGATGACA CCACAGTGGG
  TTAGGTTCTC CCCATTGATC ACTAATTGAG AAAATGCCTT ATAGCTGGAT CTCATAAAGG
  Y
  ATTTCCTCAG CTGAAGCTCC TTCCTCTCTG ACTTTGTGTC TGGTTGACTC ATAAAGCCAG
  CCAGTATACT GGTTTATCCT GAAATTCTTT TCTGTCTTTC CCTGAGAATA GCTCCAAAGA
  ATGGCTGCTC CTCAGAATAT TCTCAGCTGT GTCTCCTTTC TGCTGCTGCT GTTTCCAGAT
  GTAACTAACA GATGGCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135206844	ENSMUSSNP304199	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48190202					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411118 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	348 bp upstream
Rr375034	regulatory region 375034	332 bp upstream
Rr577237	regulatory region 577237	1470 bp distal
Rr577238	regulatory region 577238	222 bp proximal
Tssr29204	transcription start site region 29204	1512 bp downstream