rs48190389 SNP Detail

Summary

• ID
  rs48190389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37298104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCTAACC TTGTAGAGGC CCTTCTTACT GCTGCTAAGA
  TTTTGGAACG ACCATCCACA CTGCCATGCT TAATGGGAAC ACACACATGG AATCACACCA
  Y
  GTAGCTCTAA CTCACACATC CTCTCAGCTC ATCTTGCTTT CCCAGTACAT GAAACGAGAA
  GCAAGGTTGT TGCCGGGTGT GGTGGCACAC ACCTTTAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60718831	NES16358716	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	T	C	C	C	C
ss148937637	ENSMUSSNP7223449	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs48190389					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718831	NES16358716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37298104 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Gm69908	predicted gene, 69908	1334 bp downstream
Rr409496	regulatory region 409496	369 bp distal