rs48190480 SNP Detail

Summary

• ID
  rs48190480
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153536771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTGTG TCTGAAGACA
  GCTACAGTGT ACTTACATAT AATGATAAAA TAAATAAAAT TTAAAAAAAA AAAAAAAAAA
  AAGAATACAC AGTGTAGAGT TGAGGGGAAG AGAAGATTTG AGCCCTAGAG AAGGATGGAC
  GAGAGACGAC AAATGTCAGT CAGCTACCCA TCAGACAAGT GAGACAGTTA CTGTGACAGA
  T
  GCCTGGGATG GAGCAACTTA AAAAGCCGAG CTGTTCCTGC TCTTGCAGGT GTGGCTGCTG
  TGTCACATGG ATGTCAGTAG GTGGCAGAGG GGAGAGAGGC TATGTCTATG CTGAGTGTTC
  TGACCTTCAG ACATCTGAAG GATTAGTAGC CTAACATTTC CTGAAAAAAA GTGAGCCTGA
  GACCACCACC AGTCTGTCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136113954	ENSMUSSNP213330	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48190480					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153536771 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	36 bp upstream
Rr587767	regulatory region 587767	524 bp distal
Rr587768	regulatory region 587768	381 bp distal
Rr587769	regulatory region 587769	190 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	70 bp proximal
Rr587772	regulatory region 587772	676 bp proximal