rs48191235 SNP Detail

Summary

• ID
  rs48191235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:40547622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTCGTC AGGGTCTATT
  CTAAGCCATG CCAATGTCTG CTCAGAGATC ATCAGTGACT TGAGGCTGGA AAGAAGGCTC
  AGCAGCCAAG AGCACTTGCT GCTCTCTCGG AGGACCTGGC TTTGGTTCTC AGCACCCACA
  TGGTGGCTCA CATGACCATT GTGACTCTAG TTCCTTGGGA TTCAAAGCCC TCTTCTGGAC
  Y
  CCCTAGGCAC TGGGAACACA TATGGAGCAT AGGCATGCAC ACAGGCAAAT ACTCATATAC
  ATAAAATATA AATTAACCAC CCATATAAAC CATCAGTGAC TCCCTGTGCC GATAGTAGAT
  CCAAACTCCT CAGCCGCCTG TTTTTCAAAC CAACTGTGAT TGTCCCATTT CTTTTTTTTG
  GTTTTTCGAG ACAGGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147068167	ENSMUSSNP3677356	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48191235					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40547622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddo	D-aspartate oxidase			Intron
				Noncoding-Transcript-Variant
Tssr93028	transcription start site region 93028			1443 bp upstream