rs48192824 SNP Detail

Summary

• ID
  rs48192824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22173104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTCATT TCCATTCACC
  CATCTTCAAG TGTATAAATC CTTCTTCCTG TCCTTTAGCT TTCTGGTAAG CCTCATATTT
  GAAGGAATTC TTGCCTCCTG TTATTATATT CATCTAAGAC ACAGAAGAAA CATTGTCTCT
  TAGAATTCAG AAGGTTAAGA CAGGAGAACT TCTCATTTGG GGTCAGCTTG GCCTAAATGG
  Y
  GAGACATGTT TCTAGGGAAA GAATTTCAGC AGAGAATCAA TGGATAATGT GCGTCTAAAA
  ATCAAAATGT GCAGCAGCAG CAGCAACAAC AACAACAGTA GCAGCAACAA CAACAACAGT
  AGTAACAGCA ACAACAGCAG CAGCAAATTC ACTGAATCAG CCCGTGGTAC AGTGGAGATG
  ATAGAGTAAG GGCAGGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss139202781	ENSMUSSNP6505116	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48192824					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22173104 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Tssr124480	transcription start site region 124480	862 bp downstream
Tssr124481	transcription start site region 124481	583 bp downstream
Tssr124482	transcription start site region 124482	184 bp downstream
Tssr124483	transcription start site region 124483	192 bp upstream
Tssr124484	transcription start site region 124484	265 bp upstream
Tssr124485	transcription start site region 124485	741 bp upstream
Tssr124486	transcription start site region 124486	837 bp upstream