rs48194917 SNP Detail

Summary

• ID
  rs48194917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTTGGA CATTTTATGT
  CTTCCTCGTA AGGCACAGTG CCTTGCTTAG CAATTGTTTT GTCATGCCTT TTCGTGTCTT
  GAAGTGGACA CATTTATTTA TTCATGTATT TTTACAAATA ACAAAAAATA AAAACGTCTG
  TTAAAAAAAA AATCCCGTGC TTAAGTTTGT TTTATATATC TCAATATTTT ATTCTTCCAT
  Y
  GTATTGAAGG TGTCAGGAAT GCTTAAGAAA CCATGTTTCC TGCAGCAACA GCTACTAGCT
  GGAGTCTCCC TTGTTTTTGT CAAGAAGGCA CACTTGATGC CTTTCAAAGT CTCTGCAGGA
  TTTTTCTGTC AGAGAATCCC TCTCTAACAT ATTCTTTCCC CCAAGGAACA GCTTGAGGTT
  CATTGCTAAT CTGAGGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198239	NES16702756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48194917					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198239	NES16702756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053856 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	59 bp downstream
Tssr47227	transcription start site region 47227	1923 bp downstream
Tssr47228	transcription start site region 47228	1860 bp downstream
Tssr47229	transcription start site region 47229	1839 bp downstream
Tssr47230	transcription start site region 47230	1814 bp downstream
Tssr47231	transcription start site region 47231	1784 bp downstream
Tssr47232	transcription start site region 47232	1637 bp downstream
Tssr47233	transcription start site region 47233	1587 bp downstream
Tssr47234	transcription start site region 47234	1552 bp downstream
Tssr47235	transcription start site region 47235	794 bp downstream
Tssr47236	transcription start site region 47236	755 bp downstream
Tssr47237	transcription start site region 47237	735 bp downstream
Tssr47238	transcription start site region 47238	676 bp downstream
Tssr47239	transcription start site region 47239	671 bp downstream
Tssr47240	transcription start site region 47240	652 bp downstream
Tssr47241	transcription start site region 47241	623 bp downstream
Tssr47242	transcription start site region 47242	598 bp downstream
Tssr47243	transcription start site region 47243	580 bp downstream
Tssr47244	transcription start site region 47244	541 bp downstream
Tssr47245	transcription start site region 47245	524 bp downstream
Tssr47246	transcription start site region 47246	470 bp downstream
Tssr47247	transcription start site region 47247	416 bp downstream
Tssr47248	transcription start site region 47248	357 bp downstream
Tssr47249	transcription start site region 47249	296 bp downstream
Tssr47250	transcription start site region 47250	158 bp downstream
Tssr47251	transcription start site region 47251	93 bp downstream
Tssr47252	transcription start site region 47252	41 bp downstream
Tssr51812	transcription start site region 51812	1770 bp upstream
Tssr51813	transcription start site region 51813	1753 bp upstream
Tssr51814	transcription start site region 51814	779 bp upstream
Tssr51815	transcription start site region 51815	733 bp upstream
Tssr51816	transcription start site region 51816	700 bp upstream