rs48196132 SNP Detail

Summary

• ID
  rs48196132
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACACAGCG CGCCGGAAGG
  TTTCTCGAAC CGGGAGAACG GGAAGCCTGG GCAGTGCGAG CAGACCCGCC CGGCCCTCGG
  CTTTTCCGGG AGGAAGGCAT ATCTCACTCC CGCGTGCAGC CCGCTATGAG ACAGAATAGA
  GGGCCTTTAG TGATGGAGTA TGGAGATGAC AGTTGTCGTC ATGGAGAATG TTAGTTAGAA
  M
  GCTGTGATCA TTACAGGCTG GGAAGGGTGC GGTTAGGGCA ACACCGTGCA GGAGTCAGTA
  GGAACGAATT CATTGGAGAC AATACTCGCA TTTGAAGGAC CTAGAGGGGT TCGTGAACCT
  CAGCTCGCTC ACCCACTATC TCATTTTACT TAAAATAATC ACTACTGAAT TGAAAGAACT
  AGTTCATCAT AAGGCTCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445520	NES15941789	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48196132					SNP	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445520	NES15941789	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	31 bp distal
Gm9369	predicted pseudogene 9369	953 bp downstream
Rr397991	regulatory region 397991	1955 bp downstream
Rr584524	regulatory region 584524	1935 bp distal
Rr584525	regulatory region 584525	115 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	321 bp proximal
Rr584528	regulatory region 584528	1907 bp proximal
Snhg8	small nucleolar RNA host gene 8	653 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	923 bp upstream
Tssr31551	transcription start site region 31551	421 bp downstream
Tssr31552	transcription start site region 31552	374 bp downstream
Tssr35502	transcription start site region 35502	648 bp upstream
Tssr35503	transcription start site region 35503	60 bp upstream